BIOCHEMISTRY

Biochemistry & Molecular Biology Links:

AbCheck - Antibody Sequence Test - Allows you to test an antibody sequence against the Kabat sequence database.
Addgene - Archiving and distribution of plasmids that appear in published articles.
AOPredict - Antisense Oligonucleotide Prediction Program.
BankIt - GenBank Direct DNA sequence Submission.
Basic Local Alignment Search Tool (BLAST) at NCBI - Finds regions of local similarity between sequences.
Belgian EMBnet Node (BEN) - Access to databanks with nucleic acid and protein sequences as well as software.
Belvu - X-windows viewer for multiple sequence alignments.
BioExchange
Biology Links at Harvard University - At the Department of Molecular and Cellular Biology.
Biology Online - Information in the Life Sciences.
BioNetbook - A directory of Web pages for Biology.
BIOSCI/Bionet - A set of electronic communication forums.
Biotechnology Centre of Oslo - The Biotechnology Centre of Oslo.



Blixem - a graphical blast viewer - Interactive browser of pairwise Blast matches.
BLOCKS - Short multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins.
BRENDA - The Comprehensive Enzyme Information System.
Caenorhabditis elegans WWW Server
CATH Protein Structure Classification - Protein Structure Classification.
Cell and Molecular Biology Online - Informational Resource for Cell and Molecular Biologists.
Computational Biochemistry Research Group (CBRG) - Algorithms for biological questions and large scale computations.
Computational Molecular Biology At NIH
DBGET at Kyoto University Bioinformatics Center - Simple database retrieval system for a diverse range of molecular biology databases.
Dotter - Graphical dotplot program for detailed comparison of two sequences.
EMBL-EBI - Searches Databanks: EMBL Nucleotides.
European Bioinformatics Institute (EMBL-EBI) - Various sequence database similarity search tools such as Fasta, Blast, MPsrch and Scanps.
ExPASy Proteomics Server - Analysis of protein sequences and structures as well as 2-D PAGE .
Expressed Sequence Tags Database (dbEST) - Expressed Sequence Tags from a number of organisms.
Fasta Protein Database Query - Sequence similarity searching against nucleotide and protein databases using Fasta.
Genamics' GenomeSeek - Access to current and completed eukaryal and microbial genome projects.
GenomeNet - Bioinformatics Center, Institute for Chemical Research, Kyoto University.
ICE (the Institute for Candida Experimentation) - The Candida albicans physical map website.
IMGT® - International ImMunoGeneTics information system; integrated knowledge resource specialized in the immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), immunoglobulin superfamily (IgSF), major histocompatibility complex superfamily (MhcSF) and related proteins of the immune system (RPI) of human and other vertebrate species.
LDDB - Sequence-based Integrated Maps of the Human Genome.
LPSN - List of Prokaryotic names with Standing in Nomenclature.
MHCPEP - Database comprising over 13000 peptide sequences known to bind MHC molecules.
Molecular Biology Resources (on PID)
Molecular Biology Toolbox
MSPcrunch - MSPcrunch - a BLAST enhancement filter.
National Institute of Genetics, Japan - Contains several databases.
National Institutes of Health (NIH) - National Institutes of Health, USA.
NCBI - National Center for Biotechnology Information.
NCBI Entrez - Cross-database search.
NNPREDICT - Protein Secondary Structure Prediction.
Nucleic Acids Database (NDB) - Repository of three-dimensional structural information about nucleic acids.
Pfam - Large collection of multiple sequence alignments and hidden Markov models.
Phylogeny : Phylip programs - Phylip programs.
PredictProtein e-mail Server (PHD) - Predict the Secondary Structure of a Protein.
Protein Analysis Toolkit - Protein analysis toolkit for integrated biocomputing.
Protein Data Bank (RCSB PDB) - Variety of tools and resources for studying the structures of biological macromolecules.
REBASE® - Restriction Enzyme Database.
SeqAnalRef - Bibliographic reference data bank relative to papers dealing with sequence analysis.
Sequence Retrieval System at EMBL - Sequence Retrieval System.
SFINX - Integrated graphical analysis of sequence.
Stockholm - System for marking up features in a multiple alignment.
Swiss EMBnet - Several databases.
Swiss-Prot - In-Silico Analysis of Proteins.
TMHMM - Prediction of transmembrane helices in proteins - Prediction of transmembrane helices in proteins.
Medical Biochemistry
http://university.arabsbook.com/forum78/thread29301.html